DNA Binding Motif

Accessions: CtsR (DBTBS 1.0)
Names: CtsR
Organisms: Bacillus subtilis
Libraries: DBTBS 1.0 1
1 Sierro N, Makita Y, de Hoon M, Nakai K. DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information. Nucleic acids research 36:D93-6 (2008). [Pubmed]
Length: 17
Consensus: rGTCAAAGAWRGTCAAA
Weblogo:
PSSM: P0 A C G T
01 0.44 0 0.56 0 r
02 0.08 0 0.92 0 G
03 0 0 0 1 T
04 0 1 0 0 C
05 1 0 0 0 A
06 1 0 0 0 A
07 0.88 0 0 0.12 A
08 0.09 0 0.83 0.09 G
09 0.88 0 0 0.12 A
10 0.28 0 0 0.72 W
11 0.31 0 0.69 0 R
12 0.08 0 0.92 0 G
13 0 0 0 1 T
14 0 1 0 0 C
15 1 0 0 0 A
16 0.78 0 0.22 0 A
17 1 0 0 0 A
Binding TFs: CtsR (Firmicute transcriptional repressor of class III stress genes (CtsR))
Binding Sites: clpE_1
clpE_2
clpE_3
clpE_4
clpE_5
clpP_1
ctsR_1
Publications: Derré I, Rapoport G, Devine K, Rose M, Msadek T. ClpE, a novel type of HSP100 ATPase, is part of the CtsR heat shock regulon of Bacillus subtilis. Molecular microbiology 32:581-93 (1999). [Pubmed]

Derré I, Rapoport G, Msadek T. CtsR, a novel regulator of stress and heat shock response, controls clp and molecular chaperone gene expression in gram-positive bacteria. Molecular microbiology 31:117-31 (1999). [Pubmed]

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