DNA Binding Motif

Accessions: 1zg5_AB (3D-footprint 20231221)
Names: Nitrate/nitrite response regulator protein narL
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: NarL complexed to narG-89 promoter palindromic tail-to-tail DNA site
Length: 16
Consensus: TAmCCCtnnaGnGGtA
Weblogo:
PSSM: P0 A C G T
01 0 0 0 96 T
02 84 3 7 2 A
03 46 44 1 5 m
04 0 96 0 0 C
05 17 69 1 9 C
06 0 96 0 0 C
07 22 15 11 48 t
08 24 24 24 24 n
09 24 24 24 24 n
10 55 15 7 19 a
11 0 0 96 0 G
12 24 24 24 24 n
13 0 0 96 0 G
14 0 0 96 0 G
15 9 15 11 61 t
16 96 0 0 0 A
Binding TFs: 1zg5_A / 1zg5_B (Bacterial regulatory proteins, luxR family, Sigma-70, region 4, Sigma-70, region 4, Winged helix-turn-helix DNA-binding)
Binding Sites: 1zg5_C / 1zg5_D
Publications: Maris AE., Kaczor-Grzeskowiak M., Ma Z., Kopka ML., Gunsalus RP., Dickerson RE. Primary and secondary modes of DNA recognition by the NarL two-component response regulator. Biochemistry. 44(44):14538-52 (2005). [Pubmed]

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.