DNA Binding Motif

Accessions: 1nfk_AB (3D-footprint 20231221)
Names: PROTEIN (NUCLEAR FACTOR KAPPA-B (NF-KB))
Organisms: Mus musculus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: STRUCTURE OF THE NUCLEAR FACTOR KAPPA-B (NF-KB) P50 HOMODIMER
Length: 10
Consensus: GGGAatTCCC
Weblogo:
PSSM: P0 A C G T
01 0 0 96 0 G
02 0 0 96 0 G
03 0 0 96 0 G
04 81 15 0 0 A
05 59 7 14 16 a
06 7 14 14 61 t
07 7 8 0 81 T
08 0 96 0 0 C
09 0 96 0 0 C
10 0 96 0 0 C
Binding TFs: 1nfk_A / 1nfk_B (Rel homology domain (RHD))
Binding Sites: 1nfk_C / 1nfk_D
Publications: Ghosh G., van Duyne G., Ghosh S., Sigler P. B. Structure of NF-kappaB p50 homodimer bound to a kappaB site. Nature 373:303-310 (1995). [Pubmed]

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