DNA Binding Motif

						

			
Accessions: 1j59_B (3D-footprint 20231221)

			
Names: CATABOLITE GENE ACTIVATOR PROTEIN (CAP)
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: CATABOLITE GENE ACTIVATOR PROTEIN (CAP)/DNA COMPLEX + ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
Length: 6
Consensus: GTCACA
Weblogo: 
PSSM: P0      A      C      G      T
01      6      6     78      6      G
02      0      0      0     96      T
03      6     78      6      6      C
04     78      6      6      6      A
05      6     78      6      6      C
06     78      6      6      6      A
Binding TFs: 1j59_B (Cyclic nucleotide-binding domain, Bacterial regulatory proteins, crp family, Crp-like helix-turn-helix domain)
Binding Sites: 1j59_D
1j59_E
			
Publications: Parkinson G., Wilson C., Gunasekera A., Ebright YW., Ebright RE., Berman HM. Structure of the CAP-DNA complex at 2.5 angstroms resolution: a complete picture of the protein-DNA interface. J Mol Biol. 260(3):395-408 (1996). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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