DNA Binding Motif

Accessions: MA1244.1 (JASPAR 2018)
Names: ABR1
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2018 1
1 [Pubmed]
Notes: DAP-seq
Length: 19
Consensus: ggcgradrtkrCGGCGGmG
Weblogo:
PSSM: P0 A C G T
01 122 57 317 104 g
02 145 75 281 99 g
03 140 230 96 134 c
04 100 64 308 128 g
05 181 79 285 55 r
06 237 149 79 135 a
07 225 26 186 163 d
08 253 18 193 136 r
09 103 97 14 386 t
10 59 15 308 218 k
11 150 27 401 22 r
12 2 590 0 8 C
13 0 0 598 2 G
14 0 12 588 0 G
15 4 584 0 12 C
16 5 10 550 35 G
17 33 105 445 17 G
18 196 298 30 76 m
19 66 36 421 77 G
Binding TFs: Q9FGF8 (AP2 domain)
Binding Sites: MA1244.1.1
MA1244.1.10
MA1244.1.11
MA1244.1.12
MA1244.1.13
MA1244.1.14
MA1244.1.15
MA1244.1.16
MA1244.1.17
MA1244.1.18
MA1244.1.19
MA1244.1.2
MA1244.1.20
MA1244.1.3
MA1244.1.4
MA1244.1.5
MA1244.1.6
MA1244.1.7
MA1244.1.8
MA1244.1.9
Publications: Hao D., Ohme-Takagi M., Sarai A. Unique mode of GCC box recognition by the DNA-binding domain of ethylene-responsive element-binding factor (ERF domain) in plant. J. Biol. Chem. 273:26857-26861 (1998). [Pubmed]

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