DNA Binding Motif
| Accessions: | MA1244.1 (JASPAR 2024), M0080 (AthalianaCistrome v4_May2016) |
| Names: | ABR1, ABR1.DAP, T26203; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 19 |
| Consensus: | ggcgradrtkrCGGCGGmG |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 122 57 317 104 g 02 145 75 281 99 g 03 140 230 96 134 c 04 100 64 308 128 g 05 181 79 285 55 r 06 237 149 79 135 a 07 225 26 186 163 d 08 253 18 193 136 r 09 103 97 14 386 t 10 59 15 308 218 k 11 150 27 401 22 r 12 2 590 0 8 C 13 0 0 598 2 G 14 0 12 588 0 G 15 4 584 0 12 C 16 5 10 550 35 G 17 33 105 445 17 G 18 196 298 30 76 m 19 66 36 421 77 G |
| Type: | Heterodimer |
| Binding TFs: | Q9FGF8 / T26203 (AP2 domain) Q9FGF8 |
| Binding Sites: | MA1244.1.1 MA1244.1.10 MA1244.1.11 MA1244.1.12 MA1244.1.13 MA1244.1.14 MA1244.1.15 MA1244.1.16 MA1244.1.17 MA1244.1.18 MA1244.1.19 MA1244.1.2 MA1244.1.20 MA1244.1.3 MA1244.1.4 MA1244.1.5 MA1244.1.6 MA1244.1.7 MA1244.1.8 MA1244.1.9 |
| Publications: | Hao D., Ohme-Takagi M., Sarai A. Unique mode of GCC box recognition by the DNA-binding domain of ethylene-responsive element-binding factor (ERF domain) in plant. J. Biol. Chem. 273:26857-26861 (1998). [Pubmed] O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.