DNA Binding Motif

Accessions: 1ea4_HKL (3D-footprint 20231221)
Names: TRANSCRIPTIONAL REPRESSOR COPG
Organisms: Streptococcus agalactiae
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: TRANSCRIPTIONAL REPRESSOR COPG/22bp dsDNA COMPLEX
Length: 13
Consensus: yGCAtnnnGTCCA
Weblogo:
PSSM: P0 A C G T
01 4 24 4 64 y
02 0 0 96 0 G
03 4 76 9 7 C
04 96 0 0 0 A
05 16 9 14 57 t
06 24 24 24 24 n
07 24 24 24 24 n
08 24 24 24 24 n
09 9 9 69 9 G
10 0 0 0 96 T
11 0 96 0 0 C
12 0 96 0 0 C
13 81 0 15 0 A
Type: Heterodimer
Binding TFs: 1ea4_K (Ribbon-helix-helix protein, copG family)
1ea4_L (Ribbon-helix-helix protein, copG family)
1ea4_H (Ribbon-helix-helix protein, copG family)
Binding Sites: 1ea4_U
1ea4_V
Publications: Costa M, Solà M, del Solar G, Eritja R, Hernández-Arriaga A.M, Espinosa M, Gomis-Rüth F.X, Coll M. Plasmid transcriptional repressor CopG oligomerises to render helical superstructures unbound and in complexes with oligonucleotides. Journal of molecular biology 310:403-17 (2001). [Pubmed]

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