DNA Binding Motif

Accessions: 1nk3_P (3D-footprint 20231221)
Names: HOMEOBOX PROTEIN VND
Organisms: Drosophila melanogaster
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: VND/NK-2 HOMEODOMAIN/DNA COMPLEX, NMR, MINIMIZED AVERAGE STRUCTURE
Length: 8
Consensus: CAnTTGaC
Weblogo:
PSSM: P0 A C G T
01 4 82 6 4 C
02 69 4 19 4 A
03 24 24 24 24 n
04 6 4 4 82 T
05 0 0 0 96 T
06 0 0 96 0 G
07 56 15 17 8 a
08 4 84 4 4 C
Binding TFs: 1nk3_P (Homeobox domain)
Binding Sites: 1nk3_A
1nk3_B
Publications: Gruschus J.M, Tsao D.H, Wang L.H, Nirenberg M, Ferretti J.A. Interactions of the vnd/NK-2 homeodomain with DNA by nuclear magnetic resonance spectroscopy: basis of binding specificity. Biochemistry 36:5372-80 (1997). [Pubmed]

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