DNA Binding Motif

						

			
Accessions: EBF1_full (HumanTF 1.0), MA0154.3 (JASPAR 2024)

			
Names: EBF1
Organisms: Homo sapiens
Libraries: HumanTF 1.0 1, JASPAR 2024 2
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: Site type: dimeric; SELEX cycle: 3, HT-SELEX
Length: 14
Consensus: AtTCCChwGGGAmt
Weblogo: 
PSSM: P0      A      C      G      T
01   1110    115    166    153      A
02    257    276    334    678      t
03     37    232      0   1544      T
04      0   1544      3      1      C
05      3   1544      4     18      C
06      0   1544      0      6      C
07    562    391     63    529      h
08    777     77    208    482      w
09     21      6   1544      0      G
10    107      8   1544      0      G
11      6      0   1544     22      G
12   1544     17     84     24      A
13    604    586    145    209      m
14    250    364     81    849      t
Type: Heterodimer
Binding TFs: Q9UH73 (IPT/TIG domain)
EBF1_full (IPT/TIG domain)
Q9UH73
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]


Portales-Casamar E, Kirov S, Lim J, Lithwick S, Swanson M.I, Ticoll A, Snoddy J, Wasserman W.W. PAZAR: a framework for collection and dissemination of cis-regulatory sequence annotation. Genome biology 8:R207 (2007). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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