DNA Binding Motif

Accessions: UP00579A_1 (UniPROBE 20160601)
Names: ANAC105, Arabidopsis NAC domain containing protein 105, K1L20_8, K1L20.8, NAC domain containing protein, VASCULAR-RELATED NAC-DOMAIN 3, VND3
Organisms: Arabidopsis thaliana
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 12
Consensus: wrCACGGmACyt
Weblogo:
PSSM: P0 A C G T
01 0.38 0.19 0.18 0.25 w
02 0.28 0.09 0.42 0.20 r
03 0.01 0.90 0 0.09 C
04 0.98 0.01 0 0.01 A
05 0.01 0.98 0 0 C
06 0.01 0 0.98 0.01 G
07 0.06 0.01 0.86 0.07 G
08 0.39 0.60 0 0 m
09 0.93 0 0.01 0.06 A
10 0.08 0.80 0.03 0.10 C
11 0.16 0.25 0.12 0.47 y
12 0.20 0.22 0.23 0.35 t
Binding TFs: UP00579A (No apical meristem (NAM) protein)
Binding Sites: ACGGAACC
ATACGTAA
ATTCCGTG
CACGGCAC
GTTACGTA
TTACGTAA
ACACGCAA
ACACGGAA
ACACGGCA
ACACGTAA
ACACGTCA
ACGCAACT
ACGGCACT
ACGTAACT
CACGCAAC
CACGGAAC
CACGTAAC
GCACGGAA
GCACGGCA
GTTCCGTA
Publications: Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed]

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