DNA Binding Motif

Accessions: M0061 (AthalianaCistrome v4_May2016)
Names: ESE3.ampDAP, T22877;
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Length: 15
Consensus: kygrCGGCGGmGgwg
Weblogo:
PSSM: P0 A C G T
01 132 35 276 157 k
02 133 158 38 271 y
03 135 14 320 131 g
04 156 25 366 53 r
05 0 583 0 17 C
06 0 0 597 3 G
07 3 2 595 0 G
08 5 455 0 140 C
09 0 0 593 7 G
10 9 63 517 11 G
11 250 251 8 91 m
12 65 11 485 39 G
13 142 71 339 48 g
14 222 144 52 182 w
15 112 34 331 123 g
Binding TFs: T22877 (AP2 domain)
Publications: O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

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