DNA Binding Motif

						

			
Accessions: M0588 (AthalianaCistrome v4_May2016)

			
Names: AT1G72740.ampDAP, T04493;
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Length: 21
Consensus: rdwwwwrrrwTTAGGGTTTwk
Weblogo: 
PSSM: P0      A      C      G      T
01    198     76    178    140      r
02    151     75    218    148      d
03    173     76    132    211      w
04    182     53    136    221      w
05    149     91     95    257      w
06    160     90     94    248      w
07    233     89    176     94      r
08    166     69    238    119      r
09    266     38    206     82      r
10    212     24    140    216      w
11      0    135      3    454      T
12      0      0      0    592      T
13    592      0      0      0      A
14      0      0    591      1      G
15      0      0    592      0      G
16      0      0    555     37      G
17      0     34      0    558      T
18     28      2      0    562      T
19    122     47     13    410      T
20    153    146    132    161      w
21    104     74    233    181      k
Binding TFs: T04493 (Myb-like DNA-binding domain, linker histone H1 and H5 family, Myb-like DNA-binding domain)
			
Publications: O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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