DNA Binding Motif

Accessions: MA1285.1 (JASPAR 2024), M0761 (AthalianaCistrome v4_May2016)
Names: At2g45680, TCP9, At2g45680.DAP, T08434;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 21
Consensus: ccattwgyyGTGGGtCCCACm
Weblogo:
PSSM: P0 A C G T
01 77 192 60 66 c
02 85 205 57 48 c
03 195 79 51 70 a
04 65 89 49 192 t
05 50 55 78 212 t
06 103 58 42 192 w
07 65 92 151 87 g
08 92 170 30 103 y
09 89 166 34 106 y
10 46 13 332 4 G
11 1 19 1 374 T
12 16 0 379 0 G
13 1 0 394 0 G
14 24 0 370 1 G
15 53 97 23 222 t
16 0 388 0 7 C
17 2 393 0 0 C
18 1 371 1 22 C
19 356 1 38 0 A
20 2 346 11 36 C
21 104 178 36 77 m
Type: Heterodimer
Binding TFs: O64647 / T08434 (TCP family transcription factor)
O64647
Binding Sites: MA1285.1.1 / MA1285.1.11 / MA1285.1.14 / MA1285.1.16 / MA1285.1.17 / MA1285.1.18 / MA1285.1.2 / MA1285.1.20 / MA1285.1.5 / MA1285.1.7 / MA1285.1.9
MA1285.1.10 / MA1285.1.12 / MA1285.1.3 / MA1285.1.8
MA1285.1.13
MA1285.1.15
MA1285.1.19
MA1285.1.4
MA1285.1.6
Publications: Viola I. L., Uberti Manassero N. G., Ripoll R., Gonzalez D. H. The Arabidopsis class I TCP transcription factor AtTCP11 is a developmental regulator with distinct DNA binding properties due to the presence of threonine at position 15 of the TCP domain.. Biochem. J. 435:143 (2011). [Pubmed]

O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

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