DNA Binding Motif

Accessions: MA0504.1 (JASPAR 2024)
Names: NR2C2
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 15
Consensus: mgrGGTCArAGGTCA
Weblogo:
PSSM: P0 A C G T
01 129 126 90 50 m
02 82 70 221 22 g
03 193 6 195 1 r
04 0 8 366 21 G
05 10 3 355 27 G
06 3 0 79 313 T
07 6 309 54 26 C
08 343 0 48 4 A
09 187 0 208 0 r
10 324 0 71 0 A
11 10 0 385 0 G
12 11 0 336 48 G
13 0 27 89 279 T
14 9 315 35 36 C
15 290 0 92 13 A
Type: Heterodimer
Binding TFs: P49116 (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains))
P49116
Binding Sites: MA0504.1.1
MA0504.1.10
MA0504.1.11
MA0504.1.12
MA0504.1.13
MA0504.1.14
MA0504.1.15
MA0504.1.16
MA0504.1.17
MA0504.1.18
MA0504.1.19
MA0504.1.2
MA0504.1.20
MA0504.1.3
MA0504.1.4
MA0504.1.5
MA0504.1.6
MA0504.1.7
MA0504.1.8
MA0504.1.9
Publications: Lee H.J, Lee Y.F, Chang C. TR4 orphan receptor represses the human steroid 21-hydroxylase gene expression through the monomeric AGGTCA motif. Biochemical and biophysical research communications 285:1361-8 (2001). [Pubmed]

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.