DNA Binding Motif

						

			
Accessions: MA0343.1 (JASPAR 2024)

			
Names: NDT80
Organisms: Saccharomyces cerevisiae
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 21
Consensus: hytcckgmCACAAAAacsvaa
Weblogo: 
PSSM: P0      A      C      G      T
01    289    282    118    309      h
02    197    276    160    364      y
03    169    213    172    443      t
04    215    403    140    239      c
05    201    430    176    191      c
06     99    114    495    290      k
07    188     20    675    116      g
08    444    483     41     30      m
09     12    948      4     34      C
10    940      7     45      6      A
11     18    967      6      6      C
12    965      4      9     20      A
13    970      5     15      8      A
14    945      3     14     37      A
15    713     24    236     24      A
16    496    178     82    241      a
17    123    630     95    149      c
18    127    329    440    102      s
19    314    330    277     78      v
20    360    177    230    231      a
21    477    192    174    154      a
Type: Heterodimer
Binding TFs: P38830 (NDT80 / PhoG like DNA-binding  family)
P38830
			
Publications: Newburger D.E, Bulyk M.L. UniPROBE: an online database of protein binding microarray data on protein-DNA interactions. Nucleic acids research 37:D77-82 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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