DNA Binding Motif
| Accessions: | MA1255.1 (JASPAR 2024), M0062 (AthalianaCistrome v4_May2016) |
| Names: | AT1G22810, At1g22810.DAP, T01956; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 15 |
| Consensus: | GgyggyGgCGGTGGh |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 80 33 417 66 G 02 118 66 339 73 g 03 131 222 41 202 y 04 87 37 347 125 g 05 102 22 373 99 g 06 41 180 22 353 y 07 0 0 596 0 G 08 122 30 300 144 g 09 9 532 0 55 C 10 1 0 595 0 G 11 10 0 583 3 G 12 31 128 0 437 T 13 6 0 576 14 G 14 129 45 409 13 G 15 234 164 43 155 h |
| Type: | Heterodimer |
| Binding TFs: | O80542 / T01956 (AP2 domain) O80542 |
| Binding Sites: | MA1255.1.6 MA1255.1.8 MA1255.1.4 MA1255.1.15 MA1255.1.1 MA1255.1.10 MA1255.1.11 MA1255.1.12 / MA1255.1.7 MA1255.1.13 MA1255.1.14 MA1255.1.16 MA1255.1.17 MA1255.1.18 MA1255.1.19 MA1255.1.2 MA1255.1.20 MA1255.1.3 MA1255.1.5 MA1255.1.9 |
| Publications: | Magnani E, Sjölander K, Hake S. From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-77 (2004). [Pubmed] O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.