DNA Binding Motif

Accessions: MA0494.1 (JASPAR 2024)
Names: Nr1h3::Rxra
Organisms: Mus musculus
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 19
Consensus: TGaCCtvrrGTrACCyykg
Weblogo:
PSSM: P0 A C G T
01 0 50 28 1191 T
02 140 30 1089 10 G
03 738 243 137 151 a
04 246 971 0 52 C
05 58 1080 3 128 C
06 78 313 128 750 t
07 358 318 343 250 v
08 374 257 336 302 r
09 794 0 321 154 r
10 278 19 903 69 G
11 77 0 4 1188 T
12 559 77 440 193 r
13 900 177 192 0 A
14 255 962 20 32 C
15 117 1040 0 112 C
16 11 502 42 714 y
17 135 508 196 430 y
18 281 196 333 459 k
19 237 290 439 303 g
Type: Heterodimer
Binding TFs: P28700 (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains), Nuclear/hormone receptor activator site AF-1)
Q9Z0Y9 (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains))
P28700
Q9Z0Y9
Binding Sites: MA0494.1.1
MA0494.1.10
MA0494.1.11
MA0494.1.12
MA0494.1.13
MA0494.1.14
MA0494.1.15
MA0494.1.16
MA0494.1.17
MA0494.1.18
MA0494.1.19
MA0494.1.2
MA0494.1.20
MA0494.1.3
MA0494.1.4
MA0494.1.5
MA0494.1.6
MA0494.1.7
MA0494.1.8
MA0494.1.9
Publications: Shen Q, Bai Y, Chang K.C, Wang Y, Burris T.P, Freedman L.P, Thompson C.C, Nagpal S. Liver X receptor-retinoid X receptor (LXR-RXR) heterodimer cistrome reveals coordination of LXR and AP1 signaling in keratinocytes. The Journal of biological chemistry 286:14554-63 (2011). [Pubmed]

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.