DNA Binding Motif

Accessions: PB0163.1 (JASPAR 2018)
Names: Six6_2
Organisms: Mus musculus
Libraries: JASPAR 2018 1
1 Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby , Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2017) JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. doi: 10.1093/nar/gkx1126 [Pubmed]
Notes: universal protein binding microarray (PBM)
Length: 17
Consensus: mwbskATATATmcryyt
Weblogo:
PSSM: P0 A C G T
01 33 27 21 18 m
02 27 17 20 35 w
03 14 28 31 26 b
04 11 31 47 10 s
05 3 7 49 42 k
06 80 6 13 1 A
07 5 6 1 88 T
08 90 3 4 3 A
09 1 2 4 93 T
10 92 5 1 1 A
11 2 15 4 80 T
12 44 49 3 4 m
13 9 63 12 16 c
14 33 18 35 14 r
15 19 33 16 32 y
16 24 36 13 27 y
17 15 13 23 48 t
Binding TFs: Q9QZ28 (Homeobox domain, Homeobox KN domain)
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]

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