DNA Binding Motif

						

			
Accessions: GntR (RegulonDB 7.5)

			
Names: GntR, GntR DNA-binding transcriptional repressor
Organisms: ECK12
Libraries: RegulonDB 7.5 1
1 Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muniz-Rascado L, Garcia-Sotelo JS, Weiss V, Solano-Lira H, Martinez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernandez S, Alquicira-Hernandez K, Lopez-Fuentes A, Porron-Sotelo L, Huerta AM, Bonavides-Martinez C, Balderas-Martinez YI, Pannier L, Olvera M, Labastida A, Jimenez-Jacinto V, Vega-Alvarado L, Del Moral-Chavez V, Hernandez-Alvarez A, Morett E, Collado-Vides J. RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. Nucleic Acids Res. 2013 Jan 1;41(D1):D203-D213. [Pubmed]
Length: 18
Consensus: vayGTtAcscgTAwCAkw
Weblogo: 
PSSM: P0      A      C      G      T
01      3      3      3      0      v
02      6      0      1      2      a
03      0      3      0      6      y
04      0      0      8      1      G
05      0      0      0      9      T
06      2      1      0      6      t
07      8      0      1      0      A
08      0      6      1      2      c
09      1      4      3      1      s
10      1      6      2      0      c
11      2      0      5      2      g
12      0      0      0      9      T
13      8      0      0      1      A
14      5      0      0      4      w
15      1      8      0      0      C
16      7      0      0      2      A
17      2      0      4      3      k
18      5      1      0      3      w
Binding TFs: ECK120006817 (Bacterial regulatory proteins, lacI family, Periplasmic binding proteins and sugar binding domain of LacI family, Periplasmic binding protein-like domain, Periplasmic binding protein domain)
Binding Sites: ECK120012098
ECK120012120
ECK120012135
ECK120012203
ECK120012206
ECK120012209
ECK120012213
ECK120013292
ECK120013294
ECK120015288
			
	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.