DNA Binding Motif

						

			
Accessions: ATF6B_5 (HT-SELEX2 May2017), UN0112.1 (JASPAR 2024)

			
Names: ATF6B, ATF6B(var.3)
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1, JASPAR 2024 2
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: HT-SELEX
Length: 12
Consensus: yGCCACGTGGCA
Weblogo: 
PSSM: P0      A      C      G      T
01     30    281     22    434      y
02     34      9    715     45      G
03    192    715      4     16      C
04      9    715     62      8      C
05    715      7     15      1      A
06      0    715      0      0      C
07      6      7    715      0      G
08      0     14     16    715      T
09     38     36    715     16      G
10     40      4    715    210      G
11     23    715      0     26      C
12    715     53      8     71      A
Type: Heterodimer
Binding TFs: ATF6B (bZIP transcription factor, Basic region leucine zipper)
Q99941 (bZIP transcription factor, Basic region leucine zipper)
Q99941
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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