DNA Binding Motif

Accessions: 1zg5_E (3D-footprint 20231221)
Names: Nitrate/nitrite response regulator protein narL
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: NarL complexed to narG-89 promoter palindromic tail-to-tail DNA site
Length: 6
Consensus: ThCCmC
Weblogo:
PSSM: P0 A C G T
01 0 0 0 96 T
02 48 24 0 24 h
03 0 96 0 0 C
04 0 96 0 0 C
05 24 48 12 12 m
06 0 96 0 0 C
Binding TFs: 1zg5_E (Bacterial regulatory proteins, luxR family, Sigma-70, region 4, Sigma-70, region 4, Winged helix-turn-helix DNA-binding)
Binding Sites: 1zg5_G / 1zg5_H
Publications: Maris AE., Kaczor-Grzeskowiak M., Ma Z., Kopka ML., Gunsalus RP., Dickerson RE. Primary and secondary modes of DNA recognition by the NarL two-component response regulator. Biochemistry. 44(44):14538-52 (2005). [Pubmed]

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