DNA Binding Motif

Accessions: 1ram_AB (3D-footprint 20210203)
Names: PROTEIN (TRANSCRIPTION FACTOR NF-KB P65)
Organisms: Mus musculus
Libraries: 3D-footprint 20210203 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: A NOVEL DNA RECOGNITION MODE BY NF-KB P65 HOMODIMER
Length: 8
Consensus: amnTTCCA
Weblogo:
PSSM: P0 A C G T
01 52 19 8 17 a
02 43 26 17 10 m
03 24 24 24 24 n
04 0 0 0 96 T
05 0 0 0 96 T
06 0 96 0 0 C
07 0 96 0 0 C
08 80 8 8 0 A
Binding TFs: 1ram_A / 1ram_B (Rel homology domain (RHD))
Binding Sites: 1ram_C / 1ram_D
Publications: Chen Y.Q, Ghosh S, Ghosh G. A novel DNA recognition mode by the NF-kappa B p65 homodimer. Nature structural biology 5:67-73 (1998). [Pubmed]

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