DNA Binding Motif

Accessions: 5sy7_AB (3D-footprint 20231221)
Names: Aryl hydrocarbon receptor nuclear translocator
Organisms: Mus musculus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal Structure of the Heterodimeric NPAS3-ARNT Complex with HRE DNA
Length: 7
Consensus: aCGTGCg
Weblogo:
PSSM: P0 A C G T
01 54 13 13 16 a
02 0 96 0 0 C
03 0 0 96 0 G
04 0 0 0 96 T
05 0 0 96 0 G
06 0 96 0 0 C
07 13 13 57 13 g
Type: Heterodimer
Binding TFs: 5sy7_A (Helix-loop-helix DNA-binding domain, PAS fold, PAS fold, PAS domain)
5sy7_B (PAS fold, PAS fold)
Binding Sites: 5sy7_C
5sy7_D
Publications: Wu D, Su X, Potluri N, Kim Y, Rastinejad F. NPAS1-ARNT and NPAS3-ARNT crystal structures implicate the bHLH-PAS family as multi-ligand binding transcription factors. Elife : (2016). [Pubmed]

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