DNA Binding Motif

Accessions: MA0938.1 (JASPAR 2024)
Names: NAC058
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 8
Consensus: rcAMGCaA
Weblogo:
PSSM: P0 A C G T
01 370 124 344 162 r
02 95 674 55 177 c
03 913 34 22 31 A
04 257 694 26 23 M
05 26 38 908 28 G
06 116 693 72 120 C
07 628 245 20 107 a
08 770 88 26 116 A
Type: Heterodimer
Binding TFs: Q9LS50 (No apical meristem (NAM) protein)
Q9LS50
Binding Sites: MA0938.1.1
MA0938.1.10
MA0938.1.11
MA0938.1.12
MA0938.1.13
MA0938.1.14
MA0938.1.15
MA0938.1.16
MA0938.1.17
MA0938.1.18
MA0938.1.19
MA0938.1.2
MA0938.1.20
MA0938.1.3
MA0938.1.4
MA0938.1.5
MA0938.1.6
MA0938.1.7
MA0938.1.8
MA0938.1.9
Publications: Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.