DNA Binding Motif

Accessions: MA0587.1 (JASPAR 2024)
Names: TCP16
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 10
Consensus: GTGGaCCCrs
Weblogo:
PSSM: P0 A C G T
01 3 0 60 1 G
02 1 3 0 60 T
03 0 0 64 0 G
04 0 0 64 0 G
05 32 8 15 9 a
06 1 60 2 1 C
07 0 64 0 0 C
08 0 64 0 0 C
09 18 10 29 7 r
10 12 20 26 6 s
Type: Heterodimer
Binding TFs: Q9M1U4 (TCP family transcription factor)
Q9M1U4
Publications: Viola I.L, Reinheimer R, Ripoll R, Manassero N.G, Gonzalez D.H. Determinants of the DNA binding specificity of class I and class II TCP transcription factors. The Journal of biological chemistry 287:347-56 (2012). [Pubmed]

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