DNA Binding Motif

Accessions: 4g92_A (3D-footprint 20231221)
Names: HAPB protein
Organisms: Emericella nidulans
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: CCAAT-binding complex from Aspergillus nidulans with DNA
Length: 12
Consensus: CCAATCannnnT
Weblogo:
PSSM: P0 A C G T
01 0 84 6 6 C
02 0 96 0 0 C
03 96 0 0 0 A
04 90 0 0 6 A
05 0 0 6 90 T
06 6 84 0 6 C
07 60 12 18 6 a
08 24 24 24 24 n
09 24 24 24 24 n
10 24 24 24 24 n
11 24 24 24 24 n
12 18 6 6 66 T
Binding TFs: 4g92_A (CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B)
Binding Sites: 4g92_D
4g92_E
Publications: Huber E.M, Scharf D.H, Hortschansky P, Groll M, Brakhage A.A. DNA minor groove sensing and widening by the CCAAT-binding complex. Structure (London, England : 1993) 20:1757-68 (2012). [Pubmed]

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