DNA Binding Motif

						

			
Accessions: CN0093.1 (JASPAR 2024)

			
Names: LM93
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 23
Consensus: taAAGTrCTTTGAGmTCCTtrGA
Weblogo: 
PSSM: P0      A      C      G      T
01     72     97     68    311      t
02    319     39    130     60      a
03    454     37     45     12      A
04    493      6     36     13      A
05     78     15    430     25      G
06     30     87     23    408      T
07    145     37    309     57      r
08      5    497      9     37      C
09     25     39      0    484      T
10      9     72     11    456      T
11     15      5     35    493      T
12     13     12    501     22      G
13    482      7     48     11      A
14     85     14    432     17      G
15    176    284     40     48      m
16     16     23     12    497      T
17     14    450     13     71      C
18     21    406      6    115      C
19     63     70     18    397      T
20     41    102     55    350      t
21    161     20    320     47      r
22    106     21    403     18      G
23    412     28     79     29      A
			
Publications: Xie X, Mikkelsen T.S, Gnirke A, Lindblad-Toh K, Kellis M, Lander E.S. Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites. Proceedings of the National Academy of Sciences of the United States of America 104:7145-50 (2007). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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