DNA Binding Motif

Accessions: MA1405.1 (JASPAR 2018)
Names: SIZF2
Organisms: Solanum lycopersicum
Libraries: JASPAR 2018 1
1 Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby , Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2017) JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. doi: 10.1093/nar/gkx1126 [Pubmed]
Notes: PBM
Length: 10
Consensus: gACTGwCAGT
Weblogo:
PSSM: P0 A C G T
01 16191 20703 39343 23762 g
02 88380 627 8331 2662 A
03 264 78711 20496 530 C
04 3329 918 1251 94502 T
05 7440 2953 88717 889 G
06 63395 4073 4720 27813 w
07 889 88717 2953 7440 C
08 94502 1251 918 3329 A
09 530 20496 78711 264 G
10 2662 8331 627 88380 T
Binding TFs: I3NN78 (C2H2-type zinc finger, C2H2-type zinc finger)
Publications: Kubo Ki, Sakamoto A, Kobayashi A, Rybka Z, Kanno Y, Nakagawa H, Takatsuji H. Cys2/His2 zinc-finger protein family of petunia: evolution and general mechanism of target-sequence recognition. Nucleic Acids Res 26:608-15 (1998). [Pubmed]

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