DNA Binding Motif

						

			
Accessions: MA0550.2 (JASPAR 2024), M0235 (AthalianaCistrome v4_May2016)

			
Names: BZR1, BZR1.DAP, T00041;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: ChIP-chip, DAP-seq
Length: 20
Consensus: cCrCACGTGyrhmyywywht
Weblogo: 
PSSM: P0      A      C      G      T
01     95    260    131    102      c
02      4    519      4     61      C
03    351     34    203      0      r
04      0    575      0     13      C
05    573      1      4     10      A
06      0    588      0      0      C
07      0      0    588      0      G
08      5      0      0    583      T
09      0      0    588      0      G
10     11    277     39    261      y
11    213     47    280     48      r
12    198    148     91    151      h
13    165    169    114    140      m
14    106    152     78    252      y
15    111    171    133    173      y
16    166    144     73    205      w
17    141    158     98    191      y
18    150    131    121    186      w
19    164    152     85    187      h
20     96    136    126    230      t
Type: Heterodimer
Binding TFs: Q8S307 / T00041 (Plant protein of unknown function (DUF822))
Q8S307
			
Publications: He J. X., Gendron J. M., Sun Y., Gampala S. S., Gendron N., Sun C. Q., Wang Z. Y. BZR1 is a transcriptional repressor with dual roles in brassinosteroid homeostasis and growth responses.. Science 307:1634-1638 (2005). [Pubmed]


O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.