DNA Binding Motif

Accessions: 1n6j_AB (3D-footprint 2022-04-03)
Names: Myocyte-specific enhancer factor 2B
Organisms: Homo sapiens
Libraries: 3D-footprint 2022-04-03 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Structural basis of sequence-specific recruitment of histone deacetylases by Myocyte Enhancer Factor-2
Length: 9
Consensus: TawwwrtAg
Weblogo:
PSSM: P0 A C G T
01 9 9 2 76 T
02 57 12 15 12 a
03 27 22 19 28 w
04 27 21 21 27 w
05 25 22 23 26 w
06 33 22 24 17 r
07 10 15 9 62 t
08 67 7 12 10 A
09 14 14 54 14 g
Type: Heterodimer
Binding TFs: 1n6j_A (SRF-type transcription factor (DNA-binding and dimerisation domain))
1n6j_B (SRF-type transcription factor (DNA-binding and dimerisation domain))
Binding Sites: 1n6j_C
1n6j_D
Publications: Han A, Pan F, Stroud J.C, Youn H.D, Liu J.O, Chen L. Sequence-specific recruitment of transcriptional co-repressor Cabin1 by myocyte enhancer factor-2. Nature 422:730-4 (2003). [Pubmed]

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