DNA Binding Motif

Accessions: 5ke9_A (3D-footprint 20231221)
Names: Krueppel-like factor 4
Organisms: Mus musculus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: mouse Klf4 E446P ZnF1-3 and TpG/CpA sequence DNA complex structure
Length: 9
Consensus: RGGTGTGgy
Weblogo:
PSSM: P0 A C G T
01 27 0 69 0 R
02 0 0 96 0 G
03 0 0 96 0 G
04 0 0 0 96 T
05 0 0 96 0 G
06 0 0 0 96 T
07 0 0 96 0 G
08 17 10 52 17 g
09 8 43 19 26 y
Binding TFs: 5ke9_A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Binding Sites: 5ke9_B
5ke9_C
Publications: Hashimoto H, Wang D, Steves AN, Jin P, Blumenthal RM, Zhang X, Cheng X. Distinctive Klf4 mutants determine preference for DNA methylation status. Nucleic Acids Res 44:10177-10185 (2016). [Pubmed]

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