DNA Binding Motif

						

			
Accessions: PB0166.1 (JASPAR 2018)

			
Names: Sox12_2
Organisms: Mus musculus
Libraries: JASPAR 2018 1
1 Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby , Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2017) JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. doi: 10.1093/nar/gkx1126 [Pubmed]
Notes: universal protein binding microarray (PBM)
Length: 16
Consensus: mmwyasACAAAGrawt
Weblogo: 
PSSM: P0      A      C      G      T
01     38     32     21     10      m
02     35     32     22     10      m
03     32     18     21     28      w
04     14     33     21     33      y
05     66      6     15     13      a
06      5     29     54     12      s
07     89      4      4      4      A
08      4     69      9     17      C
09     88      4      2      6      A
10     86      4      7      3      A
11     79      5      4     12      A
12      9     14     71      6      G
13     30     13     49      9      r
14     65     13     11     10      a
15     35     13     22     30      w
16     20     20     10     50      t
Binding TFs: Q04890 (HMG (high mobility group) box, Domain of unknown function (DUF1898))
			
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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