DNA Binding Motif
Accessions: | PB0166.1 (JASPAR 2018) |
Names: | Sox12_2 |
Organisms: | Mus musculus |
Libraries: | JASPAR 2018 1 1 Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby , Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2017) JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. doi: 10.1093/nar/gkx1126 [Pubmed] |
Notes: | universal protein binding microarray (PBM) |
Length: | 16 |
Consensus: | mmwyasACAAAGrawt |
Weblogo: | ![]() |
PSSM: | P0 A C G T 01 38 32 21 10 m 02 35 32 22 10 m 03 32 18 21 28 w 04 14 33 21 33 y 05 66 6 15 13 a 06 5 29 54 12 s 07 89 4 4 4 A 08 4 69 9 17 C 09 88 4 2 6 A 10 86 4 7 3 A 11 79 5 4 12 A 12 9 14 71 6 G 13 30 13 49 9 r 14 65 13 11 10 a 15 35 13 22 30 w 16 20 20 10 50 t |
Binding TFs: | Q04890 (HMG (high mobility group) box, Domain of unknown function (DUF1898)) |
Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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