DNA Binding Motif

Accessions: 1cgp_B (3D-footprint 20231221)
Names: PROTEIN (CATABOLITE GENE ACTIVATOR PROTEIN (CAP))
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: CATABOLITE GENE ACTIVATOR PROTEIN (CAP)/DNA COMPLEX + ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
Length: 6
Consensus: TgTgAc
Weblogo:
PSSM: P0 A C G T
01 2 1 1 92 T
02 10 13 63 10 g
03 9 9 11 67 T
04 12 12 60 12 g
05 85 3 5 3 A
06 18 42 18 18 c
Binding TFs: 1cgp_B (Cyclic nucleotide-binding domain, Bacterial regulatory proteins, crp family, Crp-like helix-turn-helix domain)
Binding Sites: 1cgp_E
1cgp_C
1cgp_F
Publications: Schultz SC., Shields GC., Steitz TA. Crystal structure of a CAP-DNA complex: the DNA is bent by 90 degrees. Science. 253(5023):1001-7 (1991). [Pubmed]

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