DNA Binding Motif

						

			
Accessions: 3a01_E (3D-footprint 20231221)

			
Names: Homeodomain-containing protein
Organisms: Drosophila melanogaster
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of Aristaless and Clawless homeodomains bound to DNA
Length: 6
Consensus: TaATTG
Weblogo: 
PSSM: P0      A      C      G      T
01      0     19      0     77      T
02     38     20     19     19      a
03     96      0      0      0      A
04      0      0      0     96      T
05      0      0      0     96      T
06      0      0     96      0      G
Binding TFs: 3a01_E (Homeobox domain, Homeodomain leucine-zipper encoding, Homez)
Binding Sites: 3a01_G
3a01_H
			
Publications: Miyazono K, Zhi Y, Takamura Y, Nagata K, Saigo K, Kojima T, Tanokura M. Cooperative DNA-binding and sequence-recognition mechanism of aristaless and clawless. The EMBO journal 29:1613-23 (2010). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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