DNA Binding Motif
| Accessions: | 1o3t_B (3D-footprint 20231221) |
| Names: | CATABOLITE GENE ACTIVATOR PROTEIN |
| Organisms: | Escherichia coli, strain K12 |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Description: | PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXES |
| Length: | 5 |
| Consensus: | tCgCA |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 13 16 13 54 t 02 0 96 0 0 C 03 13 13 57 13 g 04 0 96 0 0 C 05 96 0 0 0 A |
| Binding TFs: | 1o3t_B (Cyclic nucleotide-binding domain, Bacterial regulatory proteins, crp family, Crp-like helix-turn-helix domain) |
| Binding Sites: | 1o3t_E 1o3t_F |
| Publications: | Chen S, Vojtechovsky J, Parkinson G.N, Ebright R.H, Berman H.M. Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: DNA binding specificity based on energetics of DNA kinking. Journal of molecular biology 314:63-74 (2001). [Pubmed] |
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