DNA Binding Motif

						

			
Accessions: 2p5l_DH (3D-footprint 20231221)

			
Names: Arginine repressor
Organisms: Bacillus subtilis, strain 168
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of a dimer of N-terminal domains of AhrC in complex with an 18bp DNA operator site
Length: 15
Consensus: AAtTCAnntTGAATT
Weblogo: 
PSSM: P0      A      C      G      T
01     80      5      6      5      A
02     96      0      0      0      A
03     10     11     10     65      t
04      0      0      0     96      T
05      0     96      0      0      C
06     96      0      0      0      A
07     24     24     24     24      n
08     24     24     24     24      n
09     10     10     11     65      t
10      0      0      0     96      T
11      0      0     96      0      G
12     96      0      0      0      A
13     71     10     10      5      A
14      0      0      0     96      T
15      5      6      5     80      T
Binding TFs: 2p5l_D / 2p5l_H (Arginine repressor, DNA binding domain)
Binding Sites: 2p5l_A
2p5l_B
			
Publications: Garnett J.A, Marincs F, Baumberg S, Stockley P.G, Phillips S.E. Structure and function of the arginine repressor-operator complex from Bacillus subtilis. Journal of molecular biology 379:284-98 (2008). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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