DNA Binding Motif

Accessions: MA0001.1 (JASPAR 2018)
Names: AGL3
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2018 1
1 Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby , Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2017) JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. doi: 10.1093/nar/gkx1126 [Pubmed]
Notes: SELEX
Length: 10
Consensus: CCAwWwaTrG
Weblogo:
PSSM: P0 A C G T
01 0 94 1 2 C
02 3 75 0 19 C
03 79 4 3 11 A
04 40 3 4 50 w
05 66 1 1 29 W
06 48 2 0 47 w
07 65 5 5 22 a
08 11 2 3 81 T
09 65 3 28 1 r
10 0 3 88 6 G
Binding TFs: P29383 (SRF-type transcription factor (DNA-binding and dimerisation domain), K-box region)
Binding Sites: MA0001.1.1
MA0001.1.10
MA0001.1.11
MA0001.1.12
MA0001.1.13
MA0001.1.14
MA0001.1.15
MA0001.1.16
MA0001.1.17
MA0001.1.18
MA0001.1.19
MA0001.1.2
MA0001.1.20
MA0001.1.3
MA0001.1.4
MA0001.1.5
MA0001.1.6
MA0001.1.7
MA0001.1.8
MA0001.1.9
Publications: Huang H., Tudor M., Weiss C. A., Hu Y., Ma H. The Arabidopsis MADS-box gene AGL3 is widely expressed and encodes a sequence-specific DNA-binding protein. Plant Mol. Biol. 28:549-567 (1995). [Pubmed]

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