DNA Binding Motif

Accessions: MA0143.1 (JASPAR 2024)
Names: Sox2
Organisms: Mus musculus
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 15
Consensus: cywTTGTyaTgcaaA
Weblogo:
PSSM: P0 A C G T
01 27 444 89 107 c
02 20 453 22 174 y
03 327 7 4 331 w
04 2 10 7 650 T
05 14 1 6 648 T
06 38 83 529 19 G
07 85 4 9 570 T
08 64 194 77 333 y
09 408 124 38 96 a
10 26 39 26 575 T
11 27 77 444 117 g
12 32 422 84 127 c
13 426 41 36 161 a
14 366 67 157 74 a
15 485 60 61 58 A
Type: Heterodimer
Binding TFs: P48432 (HMG (high mobility group) box, Domain of unknown function (DUF1898), SOX transcription factor)
P48432
Binding Sites: MA0143.1.1
MA0143.1.10
MA0143.1.11
MA0143.1.12
MA0143.1.13
MA0143.1.14
MA0143.1.15
MA0143.1.16
MA0143.1.17
MA0143.1.18
MA0143.1.19
MA0143.1.2
MA0143.1.20
MA0143.1.3
MA0143.1.4
MA0143.1.5
MA0143.1.6
MA0143.1.7
MA0143.1.8
MA0143.1.9
Publications: Chen X, Xu H, Yuan P, Fang F, Huss M, Vega V.B, Wong E, Orlov Y.L, Zhang W, Jiang J, Loh Y.H, Yeo H.C, Yeo Z.X, Narang V, Govindarajan K.R, Leong B, Shahab A, Ruan Y, Bourque G, Sung W.K, Clarke N.D, Wei C.L, Ng H.H. Integration of external signaling pathways with the core transcriptional network in embryonic stem cells. Cell 133:1106-17 (2008). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.