DNA Binding Motif

Accessions: 5kea_A (3D-footprint 20231221)
Names: Krueppel-like factor 4
Organisms: Mus musculus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: mouse Klf4 ZnF1-3 (E446D) and CpG/CpG sequence DNA complex structure: Form I
Length: 9
Consensus: smCACGCCY
Weblogo:
PSSM: P0 A C G T
01 8 26 43 19 s
02 26 43 19 8 m
03 0 96 0 0 C
04 96 0 0 0 A
05 0 96 0 0 C
06 0 0 96 0 G
07 0 96 0 0 C
08 0 96 0 0 C
09 1 69 0 26 Y
Binding TFs: 5kea_A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Binding Sites: 5kea_B
5kea_C
Publications: Hashimoto H, Wang D, Steves AN, Jin P, Blumenthal RM, Zhang X, Cheng X. Distinctive Klf4 mutants determine preference for DNA methylation status. Nucleic Acids Res 44:10177-10185 (2016). [Pubmed]

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