DNA Binding Motif

						

			
Accessions: MA1064.1 (JASPAR 2024)

			
Names: TCP2
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 10
Consensus: gtGGkmCCac
Weblogo: 
PSSM: P0      A      C      G      T
01    217    168    429    186      g
02     88    194    154    564      t
03     35      0    844    121      G
04      0      0    981     19      G
05     68     78    521    333      k
06    333    521     78     68      m
07     19    981      0      0      C
08    121    844      0     35      C
09    564    154    194     88      a
10    186    429    168    217      c
Type: Heterodimer
Binding TFs: Q93V43 (TCP family transcription factor)
Q93V43
			
Publications: Viola I. L., Uberti Manassero N. G., Ripoll R., Gonzalez D. H. The Arabidopsis class I TCP transcription factor AtTCP11 is a developmental regulator with distinct DNA binding properties due to the presence of threonine at position 15 of the TCP domain.. Biochem. J. 435:143 (2011). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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