DNA Binding Motif

Accessions: CysB (RegulonDB 7.5)
Names: CysB
Organisms: ECK12
Libraries: RegulonDB 7.5 1
1 Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muniz-Rascado L, Garcia-Sotelo JS, Weiss V, Solano-Lira H, Martinez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernandez S, Alquicira-Hernandez K, Lopez-Fuentes A, Porron-Sotelo L, Huerta AM, Bonavides-Martinez C, Balderas-Martinez YI, Pannier L, Olvera M, Labastida A, Jimenez-Jacinto V, Vega-Alvarado L, Del Moral-Chavez V, Hernandez-Alvarez A, Morett E, Collado-Vides J. RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. Nucleic Acids Res. 2013 Jan 1;41(D1):D203-D213. [Pubmed]
Length: 37
Consensus: wtaTTAtTmsMWtTkayhwkTCrtTMTCmmtwwwykr
Weblogo:
PSSM: P0 A C G T
01 3 1 1 5 w
02 0 2 2 6 t
03 6 2 2 0 a
04 2 0 0 8 T
05 2 0 0 8 T
06 7 1 0 2 A
07 1 1 2 6 t
08 0 2 0 8 T
09 3 4 1 2 m
10 2 4 3 1 s
11 7 3 0 0 M
12 3 0 0 7 W
13 2 2 0 6 t
14 1 0 2 7 T
15 2 0 3 5 k
16 4 2 2 2 a
17 1 4 0 5 y
18 3 3 0 4 h
19 4 1 0 5 w
20 2 0 4 4 k
21 0 0 0 10 T
22 1 9 0 0 C
23 4 2 3 1 r
24 2 2 0 6 t
25 1 2 0 7 T
26 7 3 0 0 M
28 0 7 1 2 C
29 3 3 2 2 m
30 3 6 1 0 m
31 2 2 2 4 t
32 3 2 2 3 w
33 3 2 0 5 w
34 3 2 2 3 w
35 2 3 0 5 y
36 2 1 4 3 k
37 3 0 5 2 r
Binding TFs: ECK120004655 (Bacterial regulatory helix-turn-helix protein, lysR family, LysR substrate binding domain)
Binding Sites: ECK120012919
ECK120012921
ECK120012923
ECK120013073
ECK120013075
ECK120013744
ECK120013746
ECK120013748
ECK120017021
ECK120029888

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.