DNA Binding Motif

						

			
Accessions: MA0138.2 (JASPAR 2024)

			
Names: REST
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 21
Consensus: tTCAGcACCatGGACAGckcC
Weblogo: 
PSSM: P0      A      C      G      T
01    211    174    366    840      t
02     58    269    146   1124      T
03     76   1366     50    105      C
04   1452     30     94     26      A
05     34     44   1516     10      G
06    122    978    323    182      c
07   1575      7     12     12      A
08      3   1586     12      5      C
09     35   1481     20     70      C
10    913    201    162    329      a
11    219    375    124    886      t
12     39      7   1551      7      G
13     20      5   1577      2      G
14   1406    112     34     51      A
15     13   1280    233     74      C
16   1574      9      7     10      A
17     42     13   1530      9      G
18    205   1007    183    198      c
19    366     31    688    507      k
20    213    933    319    125      c
21    179   1114     37    260      C
Type: Heterodimer
Binding TFs: Q13127 (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc-finger domain)
Q13127
Binding Sites: MA0138.2.1
MA0138.2.10
MA0138.2.11
MA0138.2.12
MA0138.2.13
MA0138.2.14
MA0138.2.15
MA0138.2.16
MA0138.2.17
MA0138.2.18
MA0138.2.19
MA0138.2.2
MA0138.2.20
MA0138.2.3
MA0138.2.4
MA0138.2.5
MA0138.2.6
MA0138.2.7
MA0138.2.8
MA0138.2.9
			
Publications: Johnson D.S, Mortazavi A, Myers R.M, Wold B. Genome-wide mapping of in vivo protein-DNA interactions. Science (New York, N.Y.) 316:1497-502 (2007). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.