DNA Binding Motif

Accessions: MA0162.1 (JASPAR 2024)
Names: Egr1
Organisms: Mus musculus
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: bacterial 1-hybrid
Length: 11
Consensus: yGCGTGGGcGk
Weblogo:
PSSM: P0 A C G T
01 3 4 1 7 y
02 2 1 12 0 G
03 0 13 0 2 C
04 0 0 15 0 G
05 0 0 3 12 T
06 3 0 12 0 G
07 1 0 14 0 G
08 0 0 15 0 G
09 2 10 0 3 c
10 0 0 15 0 G
11 1 0 7 7 k
Type: Heterodimer
Binding TFs: P08046 (Zinc finger, C2H2 type, Domain of unknown function (DUF3432), Domain of unknown function (DUF3446), Zinc-finger double domain, C2H2-type zinc finger)
P08046
Binding Sites: MA0162.1.1
MA0162.1.10
MA0162.1.11
MA0162.1.12
MA0162.1.13
MA0162.1.14
MA0162.1.15
MA0162.1.2
MA0162.1.3 / MA0162.1.4
MA0162.1.5
MA0162.1.6
MA0162.1.7
MA0162.1.8
MA0162.1.9
Publications: Meng X, Brodsky M.H, Wolfe S.A. A bacterial one-hybrid system for determining the DNA-binding specificity of transcription factors. Nature biotechnology 23:988-94 (2005). [Pubmed]

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.