DNA Binding Motif

						

			
Accessions: MA1416.1 (JASPAR 2024)

			
Names: RAMOSA1
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq, PBM
Length: 14
Consensus: GAGAGAGAGAGAGA
Weblogo: 
PSSM: P0      A      C      G      T
01  10200   3932  56665   4047      G
02  56235   3491  12116   3002      A
03   7487   2714  61021   3622      G
04  61422   2682   8810   1930      A
05   1100   1543  70293   1908      G
06  74267    348     83    146      A
07      9     99  74518    218      G
08  74320    279     80    165      A
09      9    119  74498    218      G
10  74515    168     70     91      A
11     35    115  74518    176      G
12  62368   2040   8936   1500      A
13   7816   2212  61788   3028      G
14  56980   2591  12358   2915      A
			
Publications: Vollbrecht E, Springer PS, Goh L, Buckler ES 4th, Martienssen R. Architecture of floral branch systems in maize and related grasses. Nature 436:1119-26 (2005). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.