DNA Binding Motif

Accessions: 1vol_AB (3D-footprint 20210203), 1vol_B (3D-footprint 20210203)
Names: PROTEIN (TATA BINDING PROTEIN (TBP))
Organisms: Arabidopsis thaliana
Libraries: 3D-footprint 20210203 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: TFIIB (HUMAN CORE DOMAIN)/TBP (A.THALIANA)/TATA ELEMENT TERNARY COMPLEX
Length: 8
Consensus: cTtTTATA
Weblogo:
PSSM: P0 A C G T
01 0 64 16 16 c
02 0 0 0 96 T
03 16 16 16 48 t
04 0 0 0 96 T
05 0 0 0 96 T
06 96 0 0 0 A
07 0 0 0 96 T
08 96 0 0 0 A
Binding TFs: 1vol_B (Transcription factor TFIID (or TATA-binding protein, TBP))
Binding Sites: 1vol_C
1vol_D
Publications: Nikolov D.B, Chen H, Halay E.D, Usheva A.A, Hisatake K, Lee D.K, Roeder R.G, Burley S.K. Crystal structure of a TFIIB-TBP-TATA-element ternary complex. Nature 377:119-28 (1995). [Pubmed]

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