DNA Binding Motif

Accessions: 4z5c_B (3D-footprint 20231221)
Names: Antitoxin HipB
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: HipB-O3 21mer complex
Length: 6
Consensus: TATCCC
Weblogo:
PSSM: P0 A C G T
01 11 9 9 67 T
02 96 0 0 0 A
03 11 9 9 67 T
04 0 96 0 0 C
05 0 96 0 0 C
06 9 67 11 9 C
Binding TFs: 4z5c_B (Helix-turn-helix, Helix-turn-helix domain, Cro/C1-type HTH DNA-binding domain, Helix-turn-helix domain, Helix-turn-helix domain)
Binding Sites: 4z5c_C
4z5c_D

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