DNA Binding Motif

						

			
Accessions: MA1051.1 (JASPAR 2024)

			
Names: RAP2-3
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 8
Consensus: gCGCCGCm
Weblogo: 
PSSM: P0      A      C      G      T
01    119    232    543    107      g
02    147    761     33     58      C
03      7      6    982      5      G
04      6    746    244      4      C
05     16    977      4      3      C
06      6      3    976     15      G
07    109    780     26     85      C
08    257    664      6     73      m
Type: Heterodimer
Binding TFs: P42736 (AP2 domain)
P42736
			
Publications: Magnani E, Sjölander K, Hake S. From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-77 (2004). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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