DNA Binding Motif

Accessions: 1gxp_A (3D-footprint 20231221)
Names: PHOSPHATE REGULON TRANSCRIPTIONAL REGULATORY PROTEIN
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: PhoB effector domain in complex with pho box DNA.
Length: 10
Consensus: CTtTnngACA
Weblogo:
PSSM: P0 A C G T
01 6 84 3 3 C
02 6 3 3 84 T
03 14 20 11 51 t
04 0 0 0 96 T
05 24 24 24 24 n
06 24 24 24 24 n
07 20 14 59 3 g
08 96 0 0 0 A
09 0 96 0 0 C
10 87 3 3 3 A
Binding TFs: 1gxp_A (Transcriptional regulatory protein, C terminal)
Binding Sites: 1gxp_C
1gxp_D
Publications: Blanco AG., Sola M., Gomis-Ruth FX., Coll M. Tandem DNA recognition by PhoB, a two-component signal transduction transcriptional activator. Structure. 10(5):701-13 (2002). [Pubmed]

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