DNA Binding Motif

Accessions: 5n9g_FGH (3D-footprint 20210203)
Names: TATA-box-binding protein
Organisms: Homo sapiens
Libraries: 3D-footprint 20210203 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: TFIIIB -TBP/Brf2/DNA and SANT domain of Bdp1-
Length: 14
Consensus: gnnTTAAAATAnnt
Weblogo:
PSSM: P0 A C G T
01 13 13 57 13 g
02 24 24 24 24 n
03 24 24 24 24 n
04 0 0 0 96 T
05 0 0 0 96 T
06 96 0 0 0 A
07 96 0 0 0 A
08 96 0 0 0 A
09 96 0 0 0 A
10 0 0 0 96 T
11 96 0 0 0 A
12 24 24 24 24 n
13 24 24 24 24 n
14 13 13 16 54 t
Binding TFs: 5n9g_G (Transcription factor TFIID (or TATA-binding protein, TBP))
Binding Sites: 5n9g_I
5n9g_J
5n9g_b
Publications: Gouge J, Guthertz N, Kramm K, Dergai O, Abascal-Palacios G, Satia K, Cousin P, Hernandez N, Grohmann D, Vannini A. Molecular mechanisms of Bdp1 in TFIIIB assembly and RNA polymerase III transcription initiation. Nat Commun 8:130 (2017). [Pubmed]

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