DNA Binding Motif

Accessions: 3zpl_AB (3D-footprint 20231221)
Names: PUTATIVE MARR-FAMILY TRANSCRIPTIONAL REPRESSOR
Organisms: 2) / M145, Streptomyces coelicolor (strain ATCC BAA-471 / A3
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of Sco3205, a MarR family transcriptional regulator from Streptomyces coelicolor, in complex with DNA
Length: 19
Consensus: AAnGTTGAnnnnTCAAnCT
Weblogo:
PSSM: P0 A C G T
01 73 3 10 10 A
02 90 2 2 2 A
03 24 24 24 24 n
04 5 2 87 2 G
05 2 2 2 90 T
06 0 0 0 96 T
07 0 0 96 0 G
08 88 2 2 4 A
09 24 24 24 24 n
10 24 24 24 24 n
11 24 24 24 24 n
12 24 24 24 24 n
13 2 2 4 88 T
14 0 96 0 0 C
15 90 1 5 0 A
16 80 2 12 2 A
17 24 24 24 24 n
18 12 68 7 9 C
19 4 2 2 88 T
Binding TFs: 3zpl_A / 3zpl_B (MarR family, MarR family, Winged helix DNA-binding domain)
Binding Sites: 3zpl_C / 3zpl_D
Publications: Stevenson C.E, Assaad A, Chandra G, Le T.B, Greive S.J, Bibb M.J, Lawson D.M. Investigation of DNA sequence recognition by a streptomycete MarR family transcriptional regulator through surface plasmon resonance and X-ray crystallography. Nucleic acids research 41:7009-22 (2013). [Pubmed]

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