DNA Binding Motif

						

			
Accessions: 6y93_AB (3D-footprint 20231221)

			
Names: Nucleoid occlusion protein
Organisms: Bacillus subtilis, strain 168
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of the DNA-binding domain of the Nucleoid Occlusion Factor (Noc) complexed to the Noc-binding site (NBS)
Length: 16
Consensus: TATTTCCngGGAAATA
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0      0     96      T
02     96      0      0      0      A
03      0      0      0     96      T
04      0      0      0     96      T
05      0      0      0     96      T
06      0     96      0      0      C
07      0     96      0      0      C
08     24     24     24     24      n
09     19     20     38     19      g
10      0      0     96      0      G
11      0      0     96      0      G
12     96      0      0      0      A
13     96      0      0      0      A
14     96      0      0      0      A
15      0      0      0     96      T
16     76      0      1     19      A
Binding TFs: 6y93_A (Helix-turn-helix, KorB domain)
Binding Sites: 6y93_C / 6y93_D
			
Publications: Jalal ASB, Tran NT, Stevenson CE, Chan EW, Lo R, Tan X, Noy A, Lawson DM, Le TBK. Diversification of DNA-Binding Specificity by Permissive and Specificity-Switching Mutations in the ParB/Noc Protein Family. Cell Rep 32:107928 (2020). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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